PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021286448.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 117aa    MW: 13671 Da    PI: 10.8993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021286448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14491187
                    EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr 87
                    f+k ltp d  k+  l +p + +  +    g+   s++l+++d+s r W++++++rkk+    v+++GW eFv++n+L+ gD v  +l+ g+
  XP_021286448.1  4 FIKRLTPTDIDKR--LAIPTNSLVYFpgfRGN--HSVDLKVKDKSHRLWTFRCSIRKKRYLkPVFSSGWLEFVRSNNLRIGDKVSVRLEqGH 91
                    7888888777765..9*****99666966444..799****************77555543699********************99987333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MELFIKRLTP TDIDKRLAIP TNSLVYFPGF RGNHSVDLKV KDKSHRLWTF RCSIRKKRYL  60
KPVFSSGWLE FVRSNNLRIG DKVSVRLEQG HVSGVEYGIE VQRKIRLLGK DVWADVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-08RAV family protein