PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286729.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 189aa MW: 21904.8 Da PI: 8.8208

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.4e-20	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++++k +G ++WktIa + g+ R++k+c++rw++yl XP_021286729.1 15 KGAWTAEEDRKLAEYIKIHGAKRWKTIAIKAGLSRCGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.5e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_021286729.1 68 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MAPKKDGVSK RVLNKGAWTA EEDRKLAEYI KIHGAKRWKT IAIKAGLSRC GKSCRLRWLN 60 YLRPNIKRGN ISDEEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKINQK 120 EKTEQTSTSE QTVPLKTWET VQMEAEVAKG SDENFELSFD ANEFFDFSTQ DCFGLDWVNK 180 FLELDDQTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	6e-54	MYB family protein