PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286836.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24618.2 Da PI: 10.5885

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LCdaeva++ifsstgk+y ++s XP_021286836.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSTGKVYQFAS 59 79***********************************************86 PP
2	K-box	65.7	1.7e-22	84	172	12	100
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++e ++ e++ Lk+ i++L++ + hl Ged+ sL +++L+qLe+qL+ + +++Rs+K +++ ++ l+++ kel+een++L+k+l+e XP_021286836.1 84 RTMEFWRSEIEELKRSINTLETRLTHLSGEDILSLGMRDLKQLERQLKIGAERVRSRKRRIVSDHATLLKRRHKELHEENTRLQKRLNE 172 56899*******************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSS TGKVYQFASH 60 DMDRSIGKYR SAVGLPDSSN PQFRTMEFWR SEIEELKRSI NTLETRLTHL SGEDILSLGM 120 RDLKQLERQL KIGAERVRSR KRRIVSDHAT LLKRRHKELH EENTRLQKRL NELRDGNLSS 180 TIVGENVCSK FQQRILQDEN LLKEPEKVSH YG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	4e-47	MIKC_MADS family protein