PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287057.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-YC

Protein Properties

Length: 237aa MW: 25605.7 Da PI: 4.84

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.3	3.5e-56	46	150	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_021287057.1 46 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 140 89***998899****************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_021287057.1 141 VDIVPRDEIK 150 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDSNQQAQSS YPPQPPTAAI TSTPSTTTSA TAPPPFHHLL QQQQQQLQMF WSYQRQEIEQ 60 VNDFKNHQLP LARIKKIMKA DEDVRMISAE APILFAKACE LFILELTIRS WLHAEENKRR 120 TLQKNDIAAA ITRTDIFDFL VDIVPRDEIK DEAGLGGMVG ATASGVPYYY PPIGQPAGGP 180 AGPGGMIIGR PAVDPTGGVY VQPPSQAWQS VWQTAGAEDG SYGSGGSSGQ GNLDGQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-85	NF-YC family protein