PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287196.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 247aa    MW: 28488.3 Da    PI: 7.9402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.8e-0788107626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+  G C+ Gd C FaHg
  XP_021287196.1  88 CPAFRN-GRCQKGDACEFAHG 107
                     556665.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MLKGVNPNFY NFAEQQLISG LNLTQRAQYK DVIDEAIYGS DEFRMYAYKI KRCTRMRSHD  60
WTECPFAHRG EKAQRRDPRK VPYTAIACPA FRNGRCQKGD ACEFAHGVFE YWLHPARYRT  120
RACNAGRFCQ RKVCFFAHTP DELRSESKCK CHFGYKGRMN GEDELLMGIG SGGGDCSTSM  180
QAHDFSVPFA STVNRDCCCL EGFSDFLRRL RAFKIMEEEE REMRNGGGFE VSDSDLPHLD  240
WISELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-75C3H family protein