PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287432.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 24748.2 Da PI: 9.7696

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+eyss XP_021287432.1 9 KKIDNTAARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEYSS 59 68***********************************************96 PP
2	K-box	52.7	1.9e-18	86	171	13	98
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +a L kei + re R+l Ge+L+ L+l+eL++Le+ L+ +l+++ ++K+e +l++i++l++k +l een++L++++ XP_021287432.1 86 EMQIESSAHAMLGKEIAEKTREMRQLRGEELQGLNLEELKHLEKLLDAGLSRVTETKDERFLKEISNLKRKGAKLMEENQQLKQQI 171 566667778889999999999***************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MTRQKIQIKK IDNTAARQVT FSKRRRGLFK KAHELSTLCD AEIALVVFSA TGKLFEYSST 60 STGQVIERRN LQSERINGLD RVPSLEMQIE SSAHAMLGKE IAEKTREMRQ LRGEELQGLN 120 LEELKHLEKL LDAGLSRVTE TKDERFLKEI SNLKRKGAKL MEENQQLKQQ IGNSSMDQAI 180 VPQQGQSSES TAHVWISADP PQGYNNSDIS LRLGLPFPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	4e-66	MIKC_MADS family protein