PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287474.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family YABBY
Protein Properties Length: 181aa    MW: 20398.1 Da    PI: 8.7611
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY171.55.5e-5361584170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                     +s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG Ct+l svnla++   +a ++           +    ++++++         s+s+ +
  XP_021287474.1   6 TSAPEQLCYIPCNLCNIILAVNVPCSSLFETVTVRCGQCTNLCSVNLATSFPSRAGKDI----------QAPSYTSSEYRIDL-----GSSSRCK 85 
                     6899*******************************************998877777663..........22222222222222.....2223333 PP

           YABBY  99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +kl++  +   + + + v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl
  XP_021287474.1  86 NKLPKRATTVNTTPERvVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 158
                     3333333333322222389****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MSSSNTSAPE QLCYIPCNLC NIILAVNVPC SSLFETVTVR CGQCTNLCSV NLATSFPSRA  60
GKDIQAPSYT SSEYRIDLGS SSRCKNKLPK RATTVNTTPE RVVNRPPDKR HRAPSLYNQF  120
IKEEIQRIKL NNPDITHREA FSTAAKNWAR FPHIHFGLML ETDNQPKLND DSTEHFQQLL  180
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-79YABBY family protein