PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287475.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

YABBY

Protein Properties

Length: 161aa MW: 18428.9 Da PI: 10.0595

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	141.7	7.8e-44	6	138	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.vir 117 v+vP +slf++vtvrCG Ct+l svnla++ +a ++ + ++++++ s+s+ ++kl++ + + + + v+r XP_021287475.1 6 VNVPCSSLFETVTVRCGQCTNLCSVNLATSFPSRAGKDI----------QAPSYTSSEYRIDL-----GSSSRCKNKLPKRATTVNTTPERvVNR 85 9*************************998877777663..........22222222222222.....22233333333333333322222389 PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl XP_021287475.1 86 PPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 138 ***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MKRWPVNVPC SSLFETVTVR CGQCTNLCSV NLATSFPSRA GKDIQAPSYT SSEYRIDLGS 60 SSRCKNKLPK RATTVNTTPE RVVNRPPDKR HRAPSLYNQF IKEEIQRIKL NNPDITHREA 120 FSTAAKNWAR FPHIHFGLML ETDNQPKLND DSTEHFQQLL K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	2e-65	YABBY family protein