PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287670.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 361aa MW: 41593.1 Da PI: 8.1092

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ +Hi tH XP_021287670.1 19 YFCEYCGICRSKKSLIASHILTH 41 78********************6 PP
2	zf-C2H2	17.6	1.1e-05	62	83	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ +F+ + +Lk+H+++H XP_021287670.1 62 TCEECSATFKKPAHLKQHLQSH 83 6*******************99 PP
3	zf-C2H2	16.7	2.1e-05	89	113	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ ++rk++L+rH+ +H XP_021287670.1 89 FVCSvdDCHANYRRKDHLNRHLLRH 113 89*********************99 PP
4	zf-C2H2	16.3	2.8e-05	118	143	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n+krH + H XP_021287670.1 118 FKCPieNCDREFAFQGNMKRHVKEfH 143 89********************9988 PP
5	zf-C2H2	16.6	2.2e-05	159	183	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H H XP_021287670.1 159 HVCQevGCGKVFKFASKLRKHEDAH 183 789999***************8766 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEEEGERVEG AIFRDIRRYF CEYCGICRSK KSLIASHILT HHPEERNNGG KEEEGASSSN 60 NTCEECSATF KKPAHLKQHL QSHSLERPFV CSVDDCHANY RRKDHLNRHL LRHQGKLFKC 120 PIENCDREFA FQGNMKRHVK EFHDDEDPSS PGLCSQKQHV CQEVGCGKVF KFASKLRKHE 180 DAHVKLDSVE AFCSEPSCMK YFTNEQCLRA HVQSCHQYIN CEICGTKQLK KNIKRHLRSH 240 EPGDVSERIK CDFEGCCHTF STKSNLRQHV KAVHEELKPF ACSFSGCGMR FSYKHVRDNH 300 EKSGCHIYVP GDFVESDEQF LSRPRGGRKR TFPTVEMLIR KRVTPPQMDT MTDLGPNLGC 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEEEGERVEG AIFRDIRRYF CEYCGICRSK KSLIASHILT HHPEERNNGG KEEEGASSSN  60
NTCEECSATF KKPAHLKQHL QSHSLERPFV CSVDDCHANY RRKDHLNRHL LRHQGKLFKC  120
PIENCDREFA FQGNMKRHVK EFHDDEDPSS PGLCSQKQHV CQEVGCGKVF KFASKLRKHE  180
DAHVKLDSVE AFCSEPSCMK YFTNEQCLRA HVQSCHQYIN CEICGTKQLK KNIKRHLRSH  240
EPGDVSERIK CDFEGCCHTF STKSNLRQHV KAVHEELKPF ACSFSGCGMR FSYKHVRDNH  300
EKSGCHIYVP GDFVESDEQF LSRPRGGRKR TFPTVEMLIR KRVTPPQMDT MTDLGPNLGC  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-155	C2H2 family protein