PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287951.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 261aa MW: 29752 Da PI: 4.7801

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +++++G +W+ ++ g++R++k+c++rw +yl XP_021287951.1 14 KGAWSAEEDDKLRSYIQRYGHWNWRELPKFAGLKRCGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	58.1	2e-18	68	112	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ T+eEd l+ +++++lG++ W+tIa++++ gRt++++k++w+++l XP_021287951.1 68 GNYTEEEDALIMKLHEELGNR-WSTIAARLP-GRTDNDIKNHWHTHL 112 789****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MVRAPFYDKN GMKKGAWSAE EDDKLRSYIQ RYGHWNWREL PKFAGLKRCG KSCRLRWMNY 60 LRPQVKQGNY TEEEDALIMK LHEELGNRWS TIAARLPGRT DNDIKNHWHT HLKKRAKRNP 120 ITSDGKEYAS TTSQTEATHN SDGEGESIII DTLPGMIIES SPLSPTTSSS TELSSFSSES 180 GFISSLSIGA TEDICLPSSE IYEDQSSGDF WSEPFVADNI YNQDGYPSSL ARGEFELPLP 240 DDMYFDESAD WLYQVLMHEL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	4e-57	MYB family protein