PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287970.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 355aa MW: 39809.5 Da PI: 7.7044

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.4e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g++R++k+c++rw +yl XP_021287970.1 14 KGPWTAEEDQKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_021287970.1 67 RGKFSIEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGKPPCCDKN GLKKGPWTAE EDQKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SIEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIKKKLLRMG 120 IDPVTHSPRL DLLELSSLLS SSLYNSSQLN PAGLLGFGSM FNPSFLNFAT ALLSSQNKTL 180 EISPENIEQN QTGNFQCQNQ YETYQANQVQ NPIQGYTTSQ ANLNHLSTNP NNNLSCQMSL 240 PNLWQEYDRE NISISTPKGF FPVQNYGYHD SINQSIINSL AENQACFSDQ NNIPNLSPFG 300 SLLSTPSSNS TPLNSSSTTY VNNNGSSTED IERDSYCSNM LMFDVPNALN VNGCV

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGKPPCCDKN GLKKGPWTAE EDQKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGKF SIEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIKKKLLRMG  120
IDPVTHSPRL DLLELSSLLS SSLYNSSQLN PAGLLGFGSM FNPSFLNFAT ALLSSQNKTL  180
EISPENIEQN QTGNFQCQNQ YETYQANQVQ NPIQGYTTSQ ANLNHLSTNP NNNLSCQMSL  240
PNLWQEYDRE NISISTPKGF FPVQNYGYHD SINQSIINSL AENQACFSDQ NNIPNLSPFG  300
SLLSTPSSNS TPLNSSSTTY VNNNGSSTED IERDSYCSNM LMFDVPNALN VNGCV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	4e-85	MYB family protein