PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287992.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 142aa MW: 16504.2 Da PI: 10.4355

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.1	5.7e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsstgkly+y+s XP_021287992.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTGKLYDYAS 59 8***********************************************86 PP
2	K-box	62.5	1.6e-21	81	141	9	69
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + +++ + +q+e+a L+++++ Lq +R+l+Ge+L+ Ls+k+Lq+L +qLe slk +R kK XP_021287992.1 81 NPASEVKFWQKEAASLRQQLQYLQDYHRKLMGEELSGLSVKDLQNLDNQLEMSLKGVRMKK 141 567889******************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TGKLYDYAST 60 SMKSVIERYK KQKEEYHQLM NPASEVKFWQ KEAASLRQQL QYLQDYHRKL MGEELSGLSV 120 KDLQNLDNQL EMSLKGVRMK KV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-77	MIKC_MADS family protein