PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288103.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 347aa MW: 38243 Da PI: 8.4258

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.5	6.4e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_021288103.1 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTS 108 79**************************.88***********988899***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl XP_021288103.1 109 gGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 77788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MESTDSSTGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLADNKANNK PPGCDLGNKK NSLRLDDWVL CRIYKKNNTH 180 RPMDHDKDDS MDEMLGPIQP SISIGSQHNA KFQLTTKGTS FGTLLENQEH SLFEGMMAGS 240 DGINSGSISQ LGCSSSKPDL SMVNPLKRTV PSLFWTDEDT AGPSTSKRFH GDSNDGSMEK 300 TDGNGSIATL LSQLPQTPPL QQQTLLGSMG DGIFRPPYQL PGLNWYS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MESTDSSTGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLADNKANNK PPGCDLGNKK NSLRLDDWVL CRIYKKNNTH  180
RPMDHDKDDS MDEMLGPIQP SISIGSQHNA KFQLTTKGTS FGTLLENQEH SLFEGMMAGS  240
DGINSGSISQ LGCSSSKPDL SMVNPLKRTV PSLFWTDEDT AGPSTSKRFH GDSNDGSMEK  300
TDGNGSIATL LSQLPQTPPL QQQTLLGSMG DGIFRPPYQL PGLNWYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-126	NAC family protein