PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288370.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 370aa MW: 41202.3 Da PI: 4.7906

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.6e-09	16	48	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg+W++ Ed++l+ ++++G ++W++ ++ g R XP_021288370.1 16 RGPWSPAEDLRLISFIQKHGHENWRALPKQAG--R 48 89**************************9998..4 PP
2	Myb_DNA-binding	50.3	5.4e-16	65	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_021288370.1 65 RGNFTREEEDTIIRLHEGLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 110 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGKGRAPCCD KNQVKRGPWS PAEDLRLISF IQKHGHENWR ALPKQAGRSL LLFFSLSLSL 60 SLSLRGNFTR EEEDTIIRLH EGLGNKWSKI ASHLPGRTDN EIKNVWNTHL KRRLASKNGN 120 IQQTDESKES SMTSSSSCSS ITFVSSSSGK RNLEIDIEHQ WDEGSVNKKP REAFAMSVSD 180 TAQDFKTEPS NHSSPSEEPK ELSSSSISSN NSNITNSSQI DVSNPENQAG SLFYCVGLFD 240 ANNASEEVNK PEILDTAFDI PLESDLDFWD MLDNLGSFQS DGIHLHEMEG NQSSNFGEGY 300 IKEAVNKKWL HDLENELGLE VTGDENQNDL SNNAAEPLVP EMYDMLLKPE ADMGMGHHHT 360 WPSSQHSPAI

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGKGRAPCCD KNQVKRGPWS PAEDLRLISF IQKHGHENWR ALPKQAGRSL LLFFSLSLSL  60
SLSLRGNFTR EEEDTIIRLH EGLGNKWSKI ASHLPGRTDN EIKNVWNTHL KRRLASKNGN  120
IQQTDESKES SMTSSSSCSS ITFVSSSSGK RNLEIDIEHQ WDEGSVNKKP REAFAMSVSD  180
TAQDFKTEPS NHSSPSEEPK ELSSSSISSN NSNITNSSQI DVSNPENQAG SLFYCVGLFD  240
ANNASEEVNK PEILDTAFDI PLESDLDFWD MLDNLGSFQS DGIHLHEMEG NQSSNFGEGY  300
IKEAVNKKWL HDLENELGLE VTGDENQNDL SNNAAEPLVP EMYDMLLKPE ADMGMGHHHT  360
WPSSQHSPAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	4e-52	MYB family protein