PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288401.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19786.4 Da    PI: 8.4168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.7e-202471148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    k+ien+++r v fskR++g+lKKA  LS L++ e+ vii+s++g++y+
  XP_021288401.1 24 KKIENQRRRWVAFSKRKKGLLKKAAQLSMLTGDEIGVIIISEQGRVYT 71
                    68*********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MDAGSTSKSR LNRKGSGRRR IEIKKIENQR RRWVAFSKRK KGLLKKAAQL SMLTGDEIGV  60
IIISEQGRVY TSDNADAVIH QYLSIKYDGQ DDNDTMDDEE KERGKGVMED GFWRRQPVDV  120
QKIDDGKQNL QEIKLFGEAL VDLKKNVVEG MEEIKGKEYL FDLNKTPDEQ FC