PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288407.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 130aa    MW: 13671.3 Da    PI: 8.6486
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-1613491450
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    skRr  ++KKA ELS+LC+a+va++ +s +gk+ +++
  XP_021288407.1 13 SKRRGNLFKKAAELSTLCGARVAIVTISDEGKVTTFP 49
                    9***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MGKQQKSGKA GTSKRRGNLF KKAAELSTLC GARVAIVTIS DEGKVTTFPD SDTVIQSYLA  60
GKVSSRSASG GNALRDSRRK GCKEGGTKQG VEEGAGETRQ GKEKVCDVAA EEGGGLMLKD  120
LNEAWDEQCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-13M-type_MADS family protein