PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021288580.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 173aa    MW: 20252.8 Da    PI: 7.7609
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021288580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-181467356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ ++++eq++eLe+ F+ n+++  e + +LA++lg++ rqV +W+qN+Ra++k
  XP_021288580.1 14 NKKRLNQEQVRELEKSFAANKKLEPELKLHLANQLGVPPRQVAIWYQNKRARWK 67
                    56789************************************************9 PP
2HD-ZIP_I/II107.11.3e-3414105293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eqv+ LE+sF +++kLepe K +la++Lg+ prqva+W+qn+RAR+kt++lE dy++L+ ++++  +e+++Lek+v++L+eel++
  XP_021288580.1  14 NKKRLNQEQVRELEKSFAANKKLEPELKLHLANQLGVPPRQVAIWYQNKRARWKTQNLELDYNTLQVKLENALSEKRMLEKDVKHLQEELRK 105
                     79***************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MDFHSQKLYA PKHNKKRLNQ EQVRELEKSF AANKKLEPEL KLHLANQLGV PPRQVAIWYQ  60
NKRARWKTQN LELDYNTLQV KLENALSEKR MLEKDVKHLQ EELRKAQEMM FSMNNYQKDP  120
RHHPPPFVSC TSAGSSEEGG SSSFHEDNVH DHEVLQIDEL YACLIGADRS TWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-42HD-ZIP family protein