PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288637.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 234aa MW: 25886.3 Da PI: 8.6681

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	6.9e-11	77	124	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka++L Av+ + +L XP_021288637.1 77 SKACREKLRRDRLNDKFMELGSILEPG---RPPKTDKAAVLIDAVRMVTQL 124 5678********************8...89************99988 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MVSPESSNYW SHFDYATLID DIPDGPYSGF SWPAQPTNAP SNVVSVENDG SLGDSDGLKE 60 SGSKKRVRSE SCNPSSSKAC REKLRRDRLN DKFMELGSIL EPGRPPKTDK AAVLIDAVRM 120 VTQLRGEAQK LKDSNSSLQE KIKELKSEKN ELRDEKQRLK AEKERLEQQL KAMNAQPSFM 180 PPAPAIPAAF AAARSSSWNK LVPFIGYPGV AMWQFMPPAA VDTSQDHVLR PPVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	1e-103	bHLH family protein