PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289365.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 357aa MW: 41203.1 Da PI: 9.9714

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.4e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw++yl XP_021289365.1 4 RQRWRAEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWNNYL 53 89***********************************************7 PP
2	Myb_DNA-binding	34.9	3.5e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T++E+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + XP_021289365.1 59 KGSLTEDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MKERQRWRAE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWN NYLKPGIKKG 60 SLTEDEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKEKNKTVDP 120 IEEGKYDRIL ETFAEKLVKE RHSSAFSMAT SNGGFLHTDP PSPAPTLLPP WLSNSSTAPA 180 VRPPSPSVTL TLSPSTVTAA PPIPWLQPER MSENTPVVLG NMVPHGSIPP CGENPLVSEL 240 VECCRELEEG QRAWVAHKKE AAWRLRRVEL QLESEKACRR REKMEEIESK VKALREEQKA 300 TLDRIEAEYR EQLEGLRRDA EAKEQKLAEQ WAAKHLRLSK FLEQMGCRPR LTEPNGR

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MKERQRWRAE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWN NYLKPGIKKG  60
SLTEDEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKEKNKTVDP  120
IEEGKYDRIL ETFAEKLVKE RHSSAFSMAT SNGGFLHTDP PSPAPTLLPP WLSNSSTAPA  180
VRPPSPSVTL TLSPSTVTAA PPIPWLQPER MSENTPVVLG NMVPHGSIPP CGENPLVSEL  240
VECCRELEEG QRAWVAHKKE AAWRLRRVEL QLESEKACRR REKMEEIESK VKALREEQKA  300
TLDRIEAEYR EQLEGLRRDA EAKEQKLAEQ WAAKHLRLSK FLEQMGCRPR LTEPNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-146	MYB family protein