PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289411.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 341aa MW: 37663.9 Da PI: 7.3646

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + + + g++R++k+c++rw++yl XP_021289411.1 14 KGPWSPEEDAKLKEYIEKHGTGgNWIALPPKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.2	1.4e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_021289411.1 69 GEFSDDEDRIICTLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KHGTGGNWIA LPPKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC TLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGM 120 ATQSHRKPHH VHHASFSSLL QSPSPSSPSP SPPLSSPSSA LLYNCSNNTY NTPVRSFRCF 180 EVSYSSNFSN SSASCVTAAS VLQPQESLLG PTQNYRLQDG LQMFVGEASC SSSDGSCSNQ 240 ISQNKELEYE YGAARGSNGA NNGEQMGMHS YFYNEADESQ TLMASNGGCA NGWSEKSSNG 300 LWGETIPLDY GLEEIKQLIC TSSCNSLFFD ENKAEEKVMY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-78	MYB family protein