PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289687.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 169aa MW: 18939.9 Da PI: 9.5595

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H XP_021289687.1 40 FECKTCHRRFSSFQALGGHRASH 62 89**********99999998887 PP
2	zf-C2H2	15.2	6.4e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H XP_021289687.1 88 HECSICGQEFSMGQALGGHMRRH 110 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MKREREHGEI QGFDIARCLM LLSQGLVETK PKDHSLSEVF ECKTCHRRFS SFQALGGHRA 60 SHKRPKLMGE KASEQTQFLS LSTKPKTHEC SICGQEFSMG QALGGHMRRH RAAMNESSFS 120 PFPVVSTVPV LKRSNSSKRI ACLDLNLTPL ENDLQVLFGT RAPKVDLCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	5e-50	C2H2 family protein