PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289702.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 255aa MW: 28754.2 Da PI: 7.0984

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.7	7.6e-43	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrF Pt+eel+++yL++k+e+++ + + vi+ v+iy+++PwdLp+ ++++ ++w+fF++ ++++a+g r++r t++gyWk XP_021289702.1 4 MPPGFRFYPTEEELISFYLHHKLESERqdlN---RlmdrVIPIVNIYEFNPWDLPQlslyLCHKDPEQWFFFIPWQESEARGGRPKRLTTTGYWK 95 79*********************995552...3333379**********656764445677************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 atg+ v+s++++ +g+k+t+vfy+grap+g+kt+W m+ey+ XP_021289702.1 96 ATGSPGCVYSSTNRPIGVKRTMVFYNGRAPNGRKTEWKMNEYK 138 ****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MEDMPPGFRF YPTEEELISF YLHHKLESER QDLNRLMDRV IPIVNIYEFN PWDLPQLSLY 60 LCHKDPEQWF FFIPWQESEA RGGRPKRLTT TGYWKATGSP GCVYSSTNRP IGVKRTMVFY 120 NGRAPNGRKT EWKMNEYKAI VEAAASSNGA TPTLRHEFSL CRVYKKSKCL RSFDRRPPAG 180 GAQIRDPAAD NQGQAAVGAA AACHQSPQMA ERTISSPESS SSGDHGNPSQ TGESSNSSAM 240 VVDYNDPFWD LLDGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-69	NAC family protein