PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021290049.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 260aa    MW: 27678.7 Da    PI: 7.4665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021290049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000471581961154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  XP_021290049.1 158 ARKEKVGDRITALQQLVSPF-----GKTDTASVLHEAMGYIKFL 196
                     577888899********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MMAETDQGFE GDQGTATTTS FSQLLFGGDD DVVSLDLGQS FNYTYSSFPA HQKTPKMLCF  60
GGQQTDAEIV FGEPLASTTK TATTPQRSGV TCSDSSSASS GNNSKSVKAP SKSTRKRNRG  120
RESVECTGAI VTAQPVNQRT DKKSKVENPA TSTGHAKARK EKVGDRITAL QQLVSPFGKT  180
DTASVLHEAM GYIKFLHDQV QVLCSPYLQH LPDGGENGGE DSRKDLKSRG LCLVPVACTV  240
HVANSNGADF WSPAMGNNGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.18e-53bHLH family protein