PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290249.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-YC

Protein Properties

Length: 257aa MW: 28268.8 Da PI: 6.1482

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178	8.9e-56	83	186	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_021290249.1 83 QLQSFWASQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 177 89***99889******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_021290249.1 178 VDIVPREDL 186 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MDQQGHGQTS ATGVIGTAAA AVPYGVTAYQ PNQMMGTSAP GSVGSIQSPT QPAGLSASSA 60 QLAQHQLAYQ HIHQQQQQQL QQQLQSFWAS QYQEIEQTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV VFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI 180 VPREDLKDEV LASVPRVGGP ADGLPYYYMP PQLAPQVGAP GMTVGKPVMD HALYGQQSRP 240 YAGQQMWPPQ QQPPSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-76	NF-YC family protein