PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290284.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 243aa MW: 27003.3 Da PI: 9.3445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde l ++++ G g+Wk+ ++ g+ R++k+c++rw +yl XP_021290284.1 14 RGRWTAEEDEALTKYINXNGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	56.3	7.3e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +v+++ lG++ W++Ia++++ gRt++++k++w ++l XP_021290284.1 67 RGNFTAQEEETIVKLHSTLGNR-WSLIAAELP-GRTDNEIKNYWKTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRSPCCEKV GLKRGRWTAE EDEALTKYIN XNGEGSWKSL PKNAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TAQEEETIVK LHSTLGNRWS LIAAELPGRT DNEIKNYWKT HLRRKIYSFT 120 KKIHDGSPHM EAVRIGDLAH KHKGRTSRSN MKRQKLALMS LGMASKNGTG TATDQETEGA 180 AEKTNIIGQM RDTNILRDLQ AGELGTNGCC MNNDARTVDG CINDKSDSPA ICSGDESCNN 240 NAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	6e-75	MYB family protein