PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021290379.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 242aa    MW: 27372.2 Da    PI: 8.224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021290379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-0894138755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + Er RR+++ + +  L++++P++     +K +  +i+ +++ YI+sL+
  XP_021290379.1  94 KKERDRREKMAENYVLLQSMVPNL----FPKATRETIVGETIAYIQSLE 138
                     57*********************8....39*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MSAFPSSHAK AEKKRQRERN MEDQQNWKGE AEEECEINEL LCSIMEGYND KVIPPLSQFS  60
PSRQAAAAIV EEKGSSSRER GRAKEAEEMT ESLKKERDRR EKMAENYVLL QSMVPNLFPK  120
ATRETIVGET IAYIQSLEKE ITRMEELKNS SESSKGKMHL YSNRKSSIDV TVSSNVVFFG  180
IQSMVRPRLV TDIFMVLHKH KAEVLAANVA VNHRQLTLTV TAVVSGNRDG TIEKIKGDIL  240
IL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-15bHLH family protein