PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290402.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 473aa MW: 49532.5 Da PI: 7.7447

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.1e-12	44	68	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_021290402.1 44 EADCIYYLRTGFCGYGSRCRFNHPR 68 789********************96 PP
2	zf-CCCH	38.8	1.6e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G +Ck++H++ XP_021290402.1 90 QPVCQYYMRTGTCKFGVSCKYHHPK 114 689********************96 PP
3	zf-CCCH	35.5	1.7e-11	135	159	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ XP_021290402.1 135 GEKECSYYVKTGQCKFGASCKFHHP 159 7899********************8 PP
4	zf-CCCH	38.7	1.6e-12	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_021290402.1 296 PGQPECQYYMKTGDCKFGSSCRYHHPP 322 5789*********************97 PP
5	zf-CCCH	34	5e-11	344	367	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+++++ G Ck+G+ CkF H+ XP_021290402.1 344 APPCSHYSQRGVCKFGAACKFDHP 367 689********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVMGAGRGG VGEYPERVGQ PVCQYYMRTG TCKFGVSCKY HHPKQGGGSV 120 SPVLLNYYGY PLRPGEKECS YYVKTGQCKF GASCKFHHPA PPAAQVPAPS PAPPVASVPT 180 PVPAPALYST VQSPSGPSSQ QYGVVMARPP LMPGSYMQSP YGPLLLPPGM VSVPSWNPYM 240 APVSPGTQPT VGSSSIFGVT PLSPSAPAYT GPYQPVPTSV GPSSSSQKEQ SFPERPGQPE 300 CQYYMKTGDC KFGSSCRYHH PPEVIAPKPD VILGPLGLPL RPGAPPCSHY SQRGVCKFGA 360 ACKFDHPTGT LSYSPSASSL ADMPVAPYPV GSTIGTLAPS SSSSELRPDL ISGSSKDPAT 420 AVMSSSVSTL SESVGSVFSE GAPIPQSSIQ QSSQSSSSST GSGSSSTEGR TSS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS  60
RCRFNHPRDR AAVMGAGRGG VGEYPERVGQ PVCQYYMRTG TCKFGVSCKY HHPKQGGGSV  120
SPVLLNYYGY PLRPGEKECS YYVKTGQCKF GASCKFHHPA PPAAQVPAPS PAPPVASVPT  180
PVPAPALYST VQSPSGPSSQ QYGVVMARPP LMPGSYMQSP YGPLLLPPGM VSVPSWNPYM  240
APVSPGTQPT VGSSSIFGVT PLSPSAPAYT GPYQPVPTSV GPSSSSQKEQ SFPERPGQPE  300
CQYYMKTGDC KFGSSCRYHH PPEVIAPKPD VILGPLGLPL RPGAPPCSHY SQRGVCKFGA  360
ACKFDHPTGT LSYSPSASSL ADMPVAPYPV GSTIGTLAPS SSSSELRPDL ISGSSKDPAT  420
AVMSSSVSTL SESVGSVFSE GAPIPQSSIQ QSSQSSSSST GSGSSSTEGR TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-133	C3H family protein