PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290454.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 290aa MW: 32799.4 Da PI: 4.9746

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +v+++G +W++ +r g+ R++k+c++rw +yl XP_021290454.1 14 KGPWTPQEDQILISYVQKYGHANWRALPRQAGLSRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	54	3.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l XP_021290454.1 67 RGNFTSEEEETIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MVRAPCCDKM GMKKGPWTPQ EDQILISYVQ KYGHANWRAL PRQAGLSRCG KSCRLRWINY 60 LRPDIKRGNF TSEEEETIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQYQ 120 TKPGTKQNTK SKPKIKCESS DNIVPIQSEF GNSSSSTGND IPARTETPGQ TPMSPQPSSS 180 EISSITNATT TTTDREVNNT DVKAENMDSW EYFPEIDESF WSDAMSSDNS SAPLTFEGVS 240 DEFQSQVPSS SVDAMETDYG YGQNLDDAME FWYDLFIKAG GEQELITEFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-86	MYB family protein