PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021290477.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 319aa    MW: 35912.6 Da    PI: 6.5145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021290477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_021290477.1 22 RGPWTVEEDFKLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding51.32.7e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_021290477.1  75 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MDVKARGCSA DVQSEEEMDL RRGPWTVEED FKLINYIATH GEGRWNSLAR CAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
QKHAKQLKCD VNSKQFKDTM RYLWMPRLAE RIQAAAAATA TSSTSVTTTT TTTTSASATT  180
TAPNVGTGQM VLPHGVLGND FGRAQVTPSY TPENSSTAAS SDSFGTQVSP VSDLTTDYYS  240
NIPVSNNPNP DYYFQASQAG YSDSLISPSG NYYSHGMDFQ SMEQNNTNNP WLDGGDDASD  300
NFFNPEDFYF LQQQFNFNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-96MYB family protein