PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291050.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 187aa MW: 20526 Da PI: 9.464

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.9	1.1e-41	71	148	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adls+ak+yhrrhkvCe+hska+v+lv+gl+qrfCqqCsrfh lsefDe+krsCrrrLa+hnerrrk+++ XP_021291050.1 71 CCQAENCTADLSDAKQYHRRHKVCEHHSKAQVALVAGLRQRFCQQCSRFHVLSEFDEAKRSCRRRLAGHNERRRKNST 148 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MEARGKQKMG KVVKREADME SDDDGSELQF GGSMEDDDKK RKDVIVLGGS GAAAAGGSGR 60 KGLTGAGAMR CCQAENCTAD LSDAKQYHRR HKVCEHHSKA QVALVAGLRQ RFCQQCSRFH 120 VLSEFDEAKR SCRRRLAGHN ERRRKNSTES HGEGSGRKGT GTQLKDMICG QVDERGRIKL 180 TIQETST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	1e-47	SBP family protein