PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291302.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 279aa MW: 32770.9 Da PI: 9.7679

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	5.9e-19	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl XP_021291302.1 21 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68 79********************************************97 PP
2	Myb_DNA-binding	48.6	1.9e-15	74	126	1	47
TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ +W+tIar ++ gRt++++k++w+++ XP_021291302.1 74 RGQITPHEESIILELHARWGNRkmettnfRWSTIARSLP-GRTDNEIKNYWRTH 126 7888*********************************.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MSWAVMAGHL GWGIIEEGWR KGPWTAEEDR LLIEYVRVHG EGRWNSVARL AGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EESIILELHA RWGNRKMETT NFRWSTIARS LPGRTDNEIK 120 NYWRTHFKKK AKLSPDNSDK AKARLLKRQQ FQQQQLLQQQ EQQRQQQQQQ QQQQQQQQQQ 180 QLQLNQFDMK RIMSLLDENE HRAPYVPQLR QEMATAYPNT TEEQGFFYPM INGNVSGSDT 240 SNEEILWDGL WNLDDVHGNF GSACATSKAT LHNLVTPFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-87	MYB family protein