PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291329.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 238aa    MW: 27598.8 Da    PI: 10.1255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.5e-0885129554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er RR++ + +++ L ++lP       +K++K +i++ A++ +++L
  XP_021291329.1  85 HMMNERMRREKQKRSYFSLHSMLPLG-----TKNDKNSIVQAATNRVQEL 129
                     889*********************97.....799999******9999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDQLIKQLLQ GEIFWYETTP APPVRQSAFV PYPNAPRIGL GLESAGCSNG VNSGNMNKRM  60
IEFLMKSWPT TRETRDTEKD RCFRHMMNER MRREKQKRSY FSLHSMLPLG TKNDKNSIVQ  120
AATNRVQELE WLKKDLQKRN QELESNLAAM TEVKINEGTK ITVRLDNPTS GIDSMLGVLK  180
CLKKLDSKPR MIQSKFTNQE FVAVMDIETE IRAAEMEKAV NRALQEAERK LQQRWTRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198MRREKQKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-44bHLH family protein