PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291526.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 349aa MW: 37393.8 Da PI: 6.5225

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.6	1.5e-36	90	187	4	104
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaks 97 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ ++s + +s + ++ + ++ XP_021291526.1 90 PKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsVNGSLKIPTS----SGKQDGDLPR 180 699***********************************************************9999955521111111111....1222222222 PP TCP 98 kksqksa 104 k++++++ XP_021291526.1 181 KRRKRPS 187 2222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MECNQNQTIE EIDERINNNA TIIINEEEEQ QSNNTTPSFS PSEATVMDPN QPMKEEDLTD 60 TEPREFTNST LVHGLVPVMP AAQINRSFVP KRPSKDRHTK VEGRGRRIRM PATCAARIFQ 120 LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGSLKIPTS SGKQDGDLPR 180 KRRKRPSNSE FIDVNEHQSS VSSGLAPIAP VTFSSVNVNS QGLVPLWPMG TFGVLPAAAG 240 GAPASNQAQL WAIPATATPF FNVAGRPISS FVSAMQPEVQ GSSVGLMGSS GVPSSNSGTT 300 GGAGVSSSSN GNSNSTTQML RDFSLEILDK RELQFLGRPA NHQRPCSKP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MECNQNQTIE EIDERINNNA TIIINEEEEQ QSNNTTPSFS PSEATVMDPN QPMKEEDLTD  60
TEPREFTNST LVHGLVPVMP AAQINRSFVP KRPSKDRHTK VEGRGRRIRM PATCAARIFQ  120
LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGSLKIPTS SGKQDGDLPR  180
KRRKRPSNSE FIDVNEHQSS VSSGLAPIAP VTFSSVNVNS QGLVPLWPMG TFGVLPAAAG  240
GAPASNQAQL WAIPATATPF FNVAGRPISS FVSAMQPEVQ GSSVGLMGSS GVPSSNSGTT  300
GGAGVSSSSN GNSNSTTQML RDFSLEILDK RELQFLGRPA NHQRPCSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	186	PRKRRKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	9e-82	TCP family protein