PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291753.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27492.4 Da PI: 5.7384

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.9e-20	38	92	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe+++ p + +++LA++lgL+ rq+ +WFqNrRa+ k XP_021291753.1 38 KNKRRFSDEQIRSLEFMFESDSRPESQIKQQLANELGLQPRQIAIWFQNRRARSK 92 56789************************************************99 PP
2	HD-ZIP_I/II	113	1.9e-36	39	130	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe++++ e++ K++la+eLglqprq+a+WFqnrRAR k+kq+E++y+ Lk++ydal+++ e+L++e+++Lr +l++ XP_021291753.1 39 NKRRFSDEQIRSLEFMFESDSRPESQIKQQLANELGLQPRQIAIWFQNRRARSKSKQIERNYNILKESYDALASSYESLKRENQSLRIQLQK 130 79*************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MLARKEQPQA AATVKVEVGL SGLDLHVHPI TNIKPRGKNK RRFSDEQIRS LEFMFESDSR 60 PESQIKQQLA NELGLQPRQI AIWFQNRRAR SKSKQIERNY NILKESYDAL ASSYESLKRE 120 NQSLRIQLQK LKSQLEMEHG NKTHEPNRTG NSGDGNSENK SAICDANEKI TFLFEGYDHM 180 ISSDNNSRDA ESRDEDRVAL DMMEATDGSW TSSEKWCGFE SNCFLDESSC SSNWWEYW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	95	RRARSKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-41	HD-ZIP family protein