PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291907.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARR-B
Protein Properties Length: 681aa    MW: 74343.4 Da    PI: 6.0876
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.2e-29213266155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_021291907.1 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                     79*******************.********************************8 PP
2Myb_DNA-binding42.61.4e-13215265148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qky+
   XP_021291907.1 215 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 265
                      678***********************************************7 PP
3Response_reg752.9e-25351431109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+   y ev+ +  +e al +l+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a + +  + + +  G
  XP_021291907.1  35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSMLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKHVVMKGVTHG 127
                     89*********************.***************999999**********************6654.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  XP_021291907.1 128 ACDYLIKPVRIEALKN 143
                     ************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    
MNSSGGKGSM STASSSAAWK AGDVVPDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT  60
KCNRAETALS MLRENKNGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKHVV  120
MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWKDFE QSGSVEEGDR QPKQSEEADY  180
SSSANEGNWK SSKKRKDDDD EAEERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQSN LNNSFISPQE ATFGPLSPLN  300
GLDLQTLAAT GQLPAQSLAT LQAAGLGRST AKSGIAMPLV DQRNIFSFEN PKLRFGEGQQ  360
QHMNNNKQIN LLHGIPTTME PKQLASLHHS AQSIGNMNVQ VTSHGVQGSQ NNSLLIQMAQ  420
PQPRGQILND SAGSHAPRLP STMGQPILSN GIAANVSTRN GIPENIRGPG YNPVSQTSSM  480
LNFPMNHTSE LPGNSFPLGS TPGISSLTSK GAFQEDLNSD IKGSGGFMPS YDIFNDLNQH  540
KPQNWELQNV GMTFDASQHS NSLQGNLDLA QSVLVQQGFS SGQMNGQNRS AAVVSKAMFS  600
AGDCTEQGNA QNVNHHLNNL LVDNTIRIKS ERVADAGPAN LFPDHFGQDD LMSALLKQQE  660
GIAPAENEFD FDGYSMDNIP V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.20.0ARR-B family protein