PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291953.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 386aa MW: 42708.4 Da PI: 6.1884

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl XP_021291953.1 14 KGLWTEEEDAKILAYVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.3	2.1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+ E+el++++++ G++ W+ Ia+ ++ gRt++++k++w++ XP_021291953.1 67 RESFTPREEELIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110 678*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY 60 LRPDLKRESF TPREEELIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QILADYGNIG GLPKSRTRVG SLNRDMKNAF LFKAEPYPSP APAAAAEGLM 180 TTIASSGMEP IQDNFFPNNS INHHADSDSS LDLLSQLQAI KALVTEASNY TGHQTISPDQ 240 FPNEYSLSSS PSSSTCSTCS TAAQXKSALA FSWRDFLLED AFLPPDHPQG QEDHVLELSS 300 RDFAGHQTPN VVPQSHSNNE ISAEHIVDTN NINNNHNGVK GMDSGVPSYG FHASSSTDDS 360 SFIAAMLDQE NEMFSEFANL LEDPCY

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKRESF TPREEELIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPVTHKPFS QILADYGNIG GLPKSRTRVG SLNRDMKNAF LFKAEPYPSP APAAAAEGLM  180
TTIASSGMEP IQDNFFPNNS INHHADSDSS LDLLSQLQAI KALVTEASNY TGHQTISPDQ  240
FPNEYSLSSS PSSSTCSTCS TAAQXKSALA FSWRDFLLED AFLPPDHPQG QEDHVLELSS  300
RDFAGHQTPN VVPQSHSNNE ISAEHIVDTN NINNNHNGVK GMDSGVPSYG FHASSSTDDS  360
SFIAAMLDQE NEMFSEFANL LEDPCY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	1e-75	MYB family protein