PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291956.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 252aa    MW: 27788.8 Da    PI: 7.0484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48e-11157204455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_021291956.1 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDPPLINESS FSAANPSSYS LAEIWPFPIN PTAGRLGVRM GNLGGFGESS GHRDGSMEES  60
TVTEQSVGCG GRRKRKDLSS EDESXXXXST TSANELNDSN GKRMKSSWTK NENADSKTEV  120
EASSAAGSKP EQSSKPAEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV  180
PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNMSPSIEGF HSKDEGGIGT  240
QRYEQKDRCT YH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277RRKRKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.13e-73bHLH family protein