PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292053.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 369aa MW: 41457.2 Da PI: 6.242

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl XP_021292053.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.3	9.9e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_021292053.1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPTTHKPLS NNVEAKEEKN RTDSVVLQIP QSKGLSASAV SSFAAHEPTF LVSDSGCYSS 180 GLTEASREQF INKQVYDPLA YIDLQAGIDP SGYNSNLVPQ YHPSVRPFDQ NHFETNSSFT 240 FTSMPSLTNF DHGNMSGTDF SDNSVSRIST SFLLNEAKES SSNSSNISSY TGFQMNSMVE 300 NGAFSWDAEN KLDSMFQFQV NGIKSEELKP GSWQEGQLHN HNSVDFSSYP LTSLSEDLTA 360 ANFDVFQQI

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLS NNVEAKEEKN RTDSVVLQIP QSKGLSASAV SSFAAHEPTF LVSDSGCYSS  180
GLTEASREQF INKQVYDPLA YIDLQAGIDP SGYNSNLVPQ YHPSVRPFDQ NHFETNSSFT  240
FTSMPSLTNF DHGNMSGTDF SDNSVSRIST SFLLNEAKES SSNSSNISSY TGFQMNSMVE  300
NGAFSWDAEN KLDSMFQFQV NGIKSEELKP GSWQEGQLHN HNSVDFSSYP LTSLSEDLTA  360
ANFDVFQQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	3e-84	MYB family protein