PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292058.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 223aa MW: 25304.5 Da PI: 9.4451

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.3e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l d+v+ +G+g W++I++ g++R++k+c++rw +yl XP_021292058.1 13 KGLWTVEEDRILMDYVRVHGKGKWNRIPKITGLKRCGKSCRLRWINYL 60 678*******************************************97 PP
2	Myb_DNA-binding	56.6	5.8e-18	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE +l+++++++lG++ W++Ia +++ gRt++q+k++w+++l XP_021292058.1 66 RGDFSEEENDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 111 899*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MRDMEEKSSD YKKGLWTVEE DRILMDYVRV HGKGKWNRIP KITGLKRCGK SCRLRWINYL 60 SPGVKRGDFS EEENDLIIRL HNLLGNRWSL IAGRVPGRTD NQVKNHWNTH LSKKLGIKKG 120 KNKVNASSRI SIGKSRQDFS TSSSQNSKLS HSCDGGGHVN PKVITASEGD SQNAVDCEGA 180 QGLIAITDDY ESSTWFFHNE LRSHTPNLME FLDESLDFVW LGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	2e-64	MYB family protein