PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292242.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 192aa MW: 21783.9 Da PI: 8.9823

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.9e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l+d+++++G g+W+ ++ g+ R++k+c++rw +yl XP_021292242.1 13 KGAWSKLEDQKLIDYIQKHGEGCWRYLPQAAGLLRCGKSCRLRWVNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	55.2	1.6e-17	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++ XP_021292242.1 66 RGNFGEDEEELIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTH 110 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MRKPCCEKKE TNKGAWSKLE DQKLIDYIQK HGEGCWRYLP QAAGLLRCGK SCRLRWVNYL 60 RPDLKRGNFG EDEEELIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH IKRKLLQKGI 120 DPNNRQLVLS SISMAKSKMS NESNSSTVDS GIDDNNQDMK FASGSESNTM SSLPDLNLDL 180 TIAPPPPLPL ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-79	MYB family protein