PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292259.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 251aa MW: 26945.4 Da PI: 8.0106

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91	1.4e-28	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++l++a pe r+ +++sl+yeA+ r+ +Pv+G+vg++++++++l+++ XP_021292259.1 4 SCNGCRVLRKGCTESCSIRPCLqwiptAQSQANATLFLAKFYGRAGLVNLINAGPEILRPGIFKSLLYEACGRIVNPVHGSVGLMWSGNWHLCEA 98 6*******************9997666789*********************************************************** PP DUF260 91 kaelallkee 100 +++++l +++ XP_021292259.1 99 AVDAVLSGSQ 108 99988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MRMSCNGCRV LRKGCTESCS IRPCLQWIPT AQSQANATLF LAKFYGRAGL VNLINAGPEI 60 LRPGIFKSLL YEACGRIVNP VHGSVGLMWS GNWHLCEAAV DAVLSGSQIN KVSSLSDSSP 120 HLKSSCDIRH VSKDKNSDDG LRQIKSRGRF KRSASKPKAK VEKEVCHESV SHESGLSQRR 180 SPGGDGAEGD TVSVETVEAS LAKADELADG SDLELDLTLG FEPRPRKRTN SNNGCDDATC 240 GVQVDLGQGL C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-72	LBD family protein