PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292289.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 297aa MW: 31966.7 Da PI: 7.6083

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	5	54	2	47
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 g W+ eE++ + +a++++ ++ +W++Ia++++ ++l+++k ++q + XP_021292289.1 5 GTWSREEEKAFENAIAMHWTEegseeQWEKIASMVP-SKSLEELKQHYQLL 54 89********************************.*********965 PP
2	Myb_DNA-binding	38.9	1.9e-12	135	179	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky XP_021292289.1 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179 7***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MAGTGTWSRE EEKAFENAIA MHWTEEGSEE QWEKIASMVP SKSLEELKQH YQLLVEDVGA 60 IEAGQVPLPS YTGEEATSSA AKDFHGFSGA AAAAAPDKRS SSGYGNGFSG LSHDSCGHGG 120 KGSSRSDQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF 180 IRLNSMNRDR RRSSIHDITS VNNGDTSHQA PITGQQANAN SPAAAAAMGP SVKHRAQPHM 240 PGLGMYGAPI GRPVAAPGHM ASAVGTPVML PPGHHHHPPP PYMVPVAYPM APPPMHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	9e-78	MYB family protein