PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292352.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 945aa MW: 106666 Da PI: 9.3505

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.5e-08	217	261	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eEd+ l+ v++ G +W Ia + +Rt+ qc r+q XP_021292352.1 217 NPWTAEEDKNLLFIVQEKGISNWFDIAVSLRSNRTPFQCLARYQR 261 58*****************************************96 PP
2	Myb_DNA-binding	44.1	4.8e-14	269	313	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k XP_021292352.1 269 KGDWTEEEDDQLRIAVEVFGECDWQSVASTLK-GRTGTQCSNRWIK 313 789**************************9.*********87 PP
3	Myb_DNA-binding	52.5	1.2e-16	323	366	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + XP_021292352.1 323 GRWTHDEDKRLKVAVMLFGPKNWRKIAEVIP-GRTQVQCRERWVN 366 8****************************.*********87 PP
4	Myb_DNA-binding	51.9	1.7e-16	375	418	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT+eEd++l a++++G W+++a++m+ Rt++qc rw ++ XP_021292352.1 375 GRWTKEEDLRLEAAIEEHGCC-WSKVAACMP-SRTDNQCWRRWKTL 418 89***************88.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence
MTDPPLRTPP SPRLLWRIPA ARMIWKFSGV YGVVLRFRWT FVSLCLFSLP AFFLQFLLMT 60 MLKMISRLFA LSRGGFGLIL AMVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS 120 RGERENLVKG IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF 180 LPKVNWDQLA SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF 240 DIAVSLRSNR TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK 300 GRTGTQCSNR WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC 360 RERWVNSLDP ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP 420 KAVPLLQEAR RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR 480 KESRSESEKE NDATLRQFSE QRTRKSCRKG AQACSSEVPG MMHENEAEAA NGHDADRKKR 540 RNPHSGNNNC IEPAQGVAYP KKRKRKPPSG SNNCTESVQD VVIQRKRRRK PPSGNNNCSD 600 SVQDDAVQTE KRKQQSESNK CIEPMQDNSS SHSLSTLCVT TNNEAESFGH SLTIKREKHP 660 KPSPKQCSKK RVHTEFGEEQ SSVCSEDSEF SGATGGAEMM HNNGVEVDIL GVDDASGKKS 720 IAKPGSKRKT CMNLSTSQSS RIISAEDFEN LPSSKKVEKR GNSSLRQHSR SRKSSELSGA 780 KDDITLASFL QDKLKKSIPS FADGDEVKLA GFLRNKSKNR RHQISENAHL SIMKGAEQRD 840 KTNQIQFGLQ HCEAKTNCDG VIPENSMFRS SLKQTIMSSD MNIVGDGIVN DTVACHEVVR 900 EPERIDQDGN CEADGITLVQ LRKRLKKRGP ASSCMRRESE LPSNG

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence

MTDPPLRTPP SPRLLWRIPA ARMIWKFSGV YGVVLRFRWT FVSLCLFSLP AFFLQFLLMT  60
MLKMISRLFA LSRGGFGLIL AMVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS  120
RGERENLVKG IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF  180
LPKVNWDQLA SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF  240
DIAVSLRSNR TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK  300
GRTGTQCSNR WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC  360
RERWVNSLDP ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP  420
KAVPLLQEAR RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR  480
KESRSESEKE NDATLRQFSE QRTRKSCRKG AQACSSEVPG MMHENEAEAA NGHDADRKKR  540
RNPHSGNNNC IEPAQGVAYP KKRKRKPPSG SNNCTESVQD VVIQRKRRRK PPSGNNNCSD  600
SVQDDAVQTE KRKQQSESNK CIEPMQDNSS SHSLSTLCVT TNNEAESFGH SLTIKREKHP  660
KPSPKQCSKK RVHTEFGEEQ SSVCSEDSEF SGATGGAEMM HNNGVEVDIL GVDDASGKKS  720
IAKPGSKRKT CMNLSTSQSS RIISAEDFEN LPSSKKVEKR GNSSLRQHSR SRKSSELSGA  780
KDDITLASFL QDKLKKSIPS FADGDEVKLA GFLRNKSKNR RHQISENAHL SIMKGAEQRD  840
KTNQIQFGLQ HCEAKTNCDG VIPENSMFRS SLKQTIMSSD MNIVGDGIVN DTVACHEVVR  900
EPERIDQDGN CEADGITLVQ LRKRLKKRGP ASSCMRRESE LPSNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	537	566	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
2	538	567	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
3	560	567	PKKRKRKP
4	561	566	KKRKRK
5	561	590	KKRKRKPPSGSNNCTESVQDVVIQRKRRRK
6	562	591	KKRKRKPPSGSNNCTESVQDVVIQRKRRRK
7	585	614	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
8	585	589	RKRRR
9	586	615	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
10	587	616	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
11	922	928	RKRLKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-150	MYB family protein