PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292445.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 344aa MW: 39198.7 Da PI: 7.2963

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	54	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++++G g+W++ a++ g++Rt+k+c++rw++yl XP_021292445.1 54 RGPWTLEEDSLLNHYIARHGEGRWNSLAKRAGLRRTGKSCRLRWLNYL 101 89********************************************97 PP
2	Myb_DNA-binding	49.3	1.1e-15	107	150	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+ l++ ++ ++G++ W++Ia++++ gRt++++k++w++ XP_021292445.1 107 RGNLTPQEQFLILSLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 150 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MHWGPFFDQE FKLGASYCLC RLVPLSIHKS DRGMSSLRKS STSSSEDDAE QLRRGPWTLE 60 EDSLLNHYIA RHGEGRWNSL AKRAGLRRTG KSCRLRWLNY LKPDVKRGNL TPQEQFLILS 120 LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKQARHLK VDPNSTAFQN VIRCFWIPRL 180 LQKMEGSSSF SSMASENTTV LQSLDQASQH QALMTLQQVP GQGPGNLSEA IQNLDHQEQN 240 SDSEHCASSC VSSSESMNNI SQISQFAEYQ TSPFRIIGNN DYNNTLAKDC YYDMETINLA 300 STSAPGDFAN PVGDCHMAEN NWFSNGFADD LWSMGELWEP RNLN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MHWGPFFDQE FKLGASYCLC RLVPLSIHKS DRGMSSLRKS STSSSEDDAE QLRRGPWTLE  60
EDSLLNHYIA RHGEGRWNSL AKRAGLRRTG KSCRLRWLNY LKPDVKRGNL TPQEQFLILS  120
LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKQARHLK VDPNSTAFQN VIRCFWIPRL  180
LQKMEGSSSF SSMASENTTV LQSLDQASQH QALMTLQQVP GQGPGNLSEA IQNLDHQEQN  240
SDSEHCASSC VSSSESMNNI SQISQFAEYQ TSPFRIIGNN DYNNTLAKDC YYDMETINLA  300
STSAPGDFAN PVGDCHMAEN NWFSNGFADD LWSMGELWEP RNLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	2e-76	MYB family protein