PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292485.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24122.2 Da    PI: 4.9392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.5e-183677243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + e ksn +vtfskRr+g++KKA+EL++L +a++ +i++s++
  XP_021292485.1 36 QLEKKSNLHVTFSKRRKGLFKKASELCILSGAKIGIIVLSPS 77
                    6789************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MLNQQKMANQ CCGDGEEGKK KPAGKTKGRQ RIEIKQLEKK SNLHVTFSKR RKGLFKKASE  60
LCILSGAKIG IIVLSPSPRE KPFCFGHPDI DTVLDQYLSG NPAFDDDDDN SQDYATLTDL  120
PGFEEIYTQY EESLKELEKE KKRGKEIEQA QNVENNDGFW WDEAIDGMGA EELEAYMKAM  180
EKLKNNLIVR ASALTMANVM ETAVQADHSY GFGGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32M-type_MADS family protein