PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292983.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARR-B

Protein Properties

Length: 581aa MW: 65135.4 Da PI: 4.9976

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.5	8.3e-25	200	253	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_021292983.1 200 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*****************.9*****************************8 PP
2	Myb_DNA-binding	39.9	9.6e-13	202	252	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT ++++++v+av+q G + +k+I m+ +t++++ s++qky+ XP_021292983.1 202 RVVWTVDLHQKFVKAVNQIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 252 678***********************************************7 PP
3	Response_reg	83.4	7.1e-28	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_021292983.1 20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALNLLRERKdsYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 112 89*******************.***********888889******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_021292983.1 113 ACDYLLKPIRMKELRN 128 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MGESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCCLA REALNLLRER 60 KDSYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKKIHE VKDIESLEGI EGLQMTRSGS DLVDDGPLLS GEDMNSARKR 180 KDAENKHDDK DLSDPSSTKK ARVVWTVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLSRLQK DSDVKNSFLG MKHSDPPSKD STASFGIHSS MSMIQDDVSN 300 STYNFSVNNS LVQNVDLNHE GDKKGITSAP VAEAKGALSL DIPDPRKAQS SQISFDHSLG 360 SVDSGLKFAL FNSTNQTQYS WSEISEIQFK QECEPLQLEN GFSQLPLPGS QHQVQTEYLQ 420 PAASISSGPS ITEKEVSSKP LYDEYRSNHV KHLSPTEAVD LFPVPSKNQT LNNQVFNPIS 480 ATMSSTKNQG ISLNDVEFAQ RNLNGGVGVP YASLSEDLQF CWLQGDYYAM NIGLQDFECI 540 EYNDPPLIAE IPFLLYDAPR FDHEHLFDPT EYAAIDQGLF A

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MGESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCCLA REALNLLRER  60
KDSYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VKDIESLEGI EGLQMTRSGS DLVDDGPLLS GEDMNSARKR  180
KDAENKHDDK DLSDPSSTKK ARVVWTVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLSRLQK DSDVKNSFLG MKHSDPPSKD STASFGIHSS MSMIQDDVSN  300
STYNFSVNNS LVQNVDLNHE GDKKGITSAP VAEAKGALSL DIPDPRKAQS SQISFDHSLG  360
SVDSGLKFAL FNSTNQTQYS WSEISEIQFK QECEPLQLEN GFSQLPLPGS QHQVQTEYLQ  420
PAASISSGPS ITEKEVSSKP LYDEYRSNHV KHLSPTEAVD LFPVPSKNQT LNNQVFNPIS  480
ATMSSTKNQG ISLNDVEFAQ RNLNGGVGVP YASLSEDLQF CWLQGDYYAM NIGLQDFECI  540
EYNDPPLIAE IPFLLYDAPR FDHEHLFDPT EYAAIDQGLF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-134	ARR-B family protein