PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292999.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27963 Da    PI: 9.1054
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  XP_021292999.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSS 59
                    79***********************************************96 PP
2K-box109.44e-36791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++   +++++ e+++Lk+++e Lq+++Rh++Ge+L+sLslkeLq+LeqqL+++lk+iRskKn+l++e+i+elq+kek++qe+n++L k+++
  XP_021292999.1  79 QLVATQPGSQANWSMEYNRLKAKVELLQKNHRHYMGENLDSLSLKELQNLEQQLDTALKHIRSKKNQLMYESISELQRKEKAIQEQNTMLAKQIK 173
                     555555556789*********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_021292999.1 174 E 174
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSSD  60
SCMEKILERY ERYSYAERQL VATQPGSQAN WSMEYNRLKA KVELLQKNHR HYMGENLDSL  120
SLKELQNLEQ QLDTALKHIR SKKNQLMYES ISELQRKEKA IQEQNTMLAK QIKEKEKTIA  180
QQSQWGQQDH GLNASPFLLP QPHPCLNIGG TYQEEAPEMR RNELDLTLEP IYPCNLGCFA  240
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-131MIKC_MADS family protein