PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293113.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 240aa MW: 27665.3 Da PI: 7.1002

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.6	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaevaviifs++gklye++s XP_021293113.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVAVIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	97.6	1.8e-32	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e++++s++qe+ kLk+++e Lqr+qRh+lGedL++L keL+qLe+qL+ slk+i s K++++l+q+ elq+ke+ l e+n++Lr+klee XP_021293113.1 82 QTESDTQSSYQEYLKLKAKVEVLQRSQRHFLGEDLGDLCSKELEQLEHQLDFSLKQIGSSKMHFMLDQLVELQRKEEILLETNRNLRRKLEE 173 68999************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVAVIIFSN RGKLYEFCST 60 FSMAKTLERY HRCTYGTLEP GQTESDTQSS YQEYLKLKAK VEVLQRSQRH FLGEDLGDLC 120 SKELEQLEHQ LDFSLKQIGS SKMHFMLDQL VELQRKEEIL LETNRNLRRK LEESTSTLRL 180 SWETGEQSNP YNHHQLPQSE GFFEPLQCSS SMQIGYNPTA TDQDTAAASA PNGFIPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	5e-95	MIKC_MADS family protein