PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293225.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 301aa MW: 33296.3 Da PI: 6.3663

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed++l++++k +G g W++I++ g++R++k+c++rw++yl XP_021293225.1 15 RGTWTATEDKILIEYIKAHGEGKWRSIPKAAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++ XP_021293225.1 68 RGNITRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNSV 112 7899****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGRKPCCSKE EGLNRGTWTA TEDKILIEYI KAHGEGKWRS IPKAAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITRDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNHWN SVLSKRAQVK 120 EFDPTTKDEK KQRFISCSRK APTSSGVIQG NAGRCTKVSF SPQQKVIGED DSNTIVHTAP 180 SMDVELVHET AVASGSSDGS FTLLSSKEEN PSISRFAMDF GIGESSISET LASDFSQLSD 240 FDFCDTNTVI YEYGTKDNGQ ALLSPEGMVG NWSGNDCVDA NWDSDLGYLA AFLESTGDLT 300 I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-61	MYB family protein