PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293275.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 210aa MW: 24180.2 Da PI: 8.4921

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.2e-15	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l d+++ +G g+W++I++ ++R++k+c++rw++yl XP_021293275.1 11 KGLWTEEEDKILSDYIRVHGRGHWNRISKVTALKRCGKSCRLRWLTYL 58 678***************************9***********97 PP
2	Myb_DNA-binding	58.5	1.5e-18	65	109	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +++eEd+l+++++++lG++ W++Ia +++ gRt++q+k++w+++l XP_021293275.1 65 GQFSEEEDDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 109 579****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MKGLENEHYR KGLWTEEEDK ILSDYIRVHG RGHWNRISKV TALKRCGKSC RLRWLTYLSP 60 DIKLGQFSEE EDDLIIRLHN LLGNRWSLIA GRVPGRTDNQ VKNHWNTHLC KKLGIKKPRG 120 KAERSTRKVS SPTDETKTVS ADNFNFEPLQ SSRITMSVDC PMNTSETSNH DAETHQFNDD 180 QHCVQSLLSA GDSFKMNSPG FLEFLDGLFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	3e-65	MYB family protein